rs30859925 SNP Detail

Summary

• ID
  rs30859925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131136180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTCCCAC AGATGATGTT ATTGTTCCTT CTACGAACGA
  GACAAAAGGA GGTCAGAAAT GGCTTGTCTA ATTACCAACC ATGTGAAATA TTAACATACT
  Y
  GAGGTAAGGA AACGAGTATC AAAGGTGCCT GCTTTACAAA GGTATCCTCA GAACACAGTC
  AAGAATGCTG AGATTGGATT TATTTATAAG GTGCTAGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45472967	mCV24946429	ABI	CRAMUS_MOUSE	f	SNP		T					T		C
ss61080893	NES16597368	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C		C	C	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30859925					SNP	T	T	T	T	T	C	T	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080893	NES16597368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131136180 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66385	predicted gene, 66385			305 bp upstream
Rr375745	regulatory region 375745			1807 bp downstream
Rr585340	regulatory region 585340			within coordinates
Rr585341	regulatory region 585341			779 bp proximal
Sgms2	sphingomyelin synthase 2			Intron
				Noncoding-Transcript-Variant
Tssr35690	transcription start site region 35690			958 bp downstream