rs30859908 SNP Detail

Summary

• ID
  rs30859908
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:107509853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTCTAGAA GCTATGCAGA AGTCAGAAAG TAGCATTGGT
  GTGCTGAGCT CTTCTGGGAC TTTCAAACTT GGCGTTGTTG TCCTCACGAT GGAATTGAGG
  S
  ATGACTAAAA TAAGAGAGAG AGAGTGATAG AGAGAGAGAG AGAAAGAGGG AGAGAGAGAG
  AGACATGGCT TTTCTGAGCC CACATGCCCC TTTGTTGTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45973499	mCV23133291	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
ss133484720	ENSMUSSNP5930574	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30859908					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:107509853 () rs orientation: forward

Symbol	Name	Function Class
Lrrn1	leucine rich repeat protein 1, neuronal	Intron
Rr636001	regulatory region 636001	903 bp distal
Rr636003	regulatory region 636003	1605 bp proximal