rs30859747 SNP Detail

Summary

• ID
  rs30859747
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134592469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTGACT ATGACTGTCC
  TAGGTCATGG TGTCCCATCA CACAGTAGAG CAGTGACTAA GACTGTCCTA GTTGTGAGCT
  TTGGCTTTGG AAATGTGACC AAATCTTCAG TCTCCAGCTA ACACCTTTTC CAAACCACAA
  ATCTTGCTAC TTACATATTC ATCACATTTT TCTTCTAGTG TTTTTCTTCC TTAGAGCATA
  Y
  CTCTGCCCAA GCAGTATCTG TTTGCCTGGG TTTTCTCTCA CATTCTGTTC TGTATGACCG
  TATTTTAGGG CTAAACAGTT ATGAGCAGTG AGTTGAAACT TCCTTGTGGT CTTGGCACCT
  ACCTATTTAT TCTATTTAAA TGCAGCTCTG CTTCATTCCT GGTATTAATC TCTTGGATCT
  TGTCATTATC TTTCCCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49677613	NES12989970	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30859747					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49677613	NES12989970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134592469 () rs orientation: forward

Symbol	Name	Function Class
Rr418971	regulatory region 418971	192 bp proximal
Syt2	synaptotagmin II	Intron