rs30859343 SNP Detail

Summary

• ID
  rs30859343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:144993030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAA TGCCTTACCC TAAAAGTCTC
  Y
  GCCACTTCTT CTGATCCTCT TTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss45972469	mCV23990285	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss48141276	NES11826481	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	C		C	C	C	C	T
ss133960838	ENSMUSSNP6020693	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs30859343					SNP	T	T	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48141276	NES11826481	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144993030 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcat1	branched chain aminotransferase 1, cytosolic			Coding-Synonymous
				Intron
Gm15687	predicted gene 15687			233 bp upstream
Gm26666	predicted gene, 26666			255 bp upstream
Rr641039	regulatory region 641039			1637 bp distal
Rr641040	regulatory region 641040			within coordinates
Rr641041	regulatory region 641041			1498 bp proximal
Tssr2055	transcription start site region 2055			1743 bp downstream
Tssr59519	transcription start site region 59519			1234 bp upstream
Tssr64030	transcription start site region 64030			201 bp downstream
Tssr64031	transcription start site region 64031			226 bp downstream
Tssr64032	transcription start site region 64032			301 bp downstream
Tssr64033	transcription start site region 64033			332 bp downstream
Tssr64034	transcription start site region 64034			360 bp downstream
Tssr64035	transcription start site region 64035			421 bp downstream
Tssr64036	transcription start site region 64036			1281 bp downstream
Tssr64037	transcription start site region 64037			1297 bp downstream
Tssr64038	transcription start site region 64038			1352 bp downstream
Tssr64039	transcription start site region 64039			1372 bp downstream
Tssr64040	transcription start site region 64040			1391 bp downstream
Tssr64041	transcription start site region 64041			1406 bp downstream
Tssr64042	transcription start site region 64042			1426 bp downstream
Tssr64043	transcription start site region 64043			1445 bp downstream
Tssr64044	transcription start site region 64044			1505 bp downstream
Tssr64045	transcription start site region 64045			1535 bp downstream