rs30859176 SNP Detail

Summary

• ID
  rs30859176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126388935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGGATC TCTCAGTTTG
  AGGCTCAGCC TGGTTTGCAT AGTGAGTTCC ATGCCATTTA AGAGAGACAC ACTGAGACTA
  TTCCAATCAA ATAAAAATGT TCAAATTTAA GGACATAAAA AACAAAATTT GCTTTTAAAA
  ACAAAAAGGA ATCAAAGCTA TATAAAAACC ACAGAGGAAC TTCAATAAGC TTCCAAGGGT
  R
  TCCCACAATG ACAACTGAAC AGCAGAGGCC CCCAGGTAGG AACAATACAA GACAAAGCGG
  GACGTGTGCT GATCCCACGT GCTTGGCAAC GTCAAAAATC AGCACTAGGA ATCTAGTGCG
  TGGGCAGAAT ATCAAATGAT GTAAGTAAAA TTGAAGGGAA AATTATAGTA AAACAGGCCA
  GTAAATGACA TTTTCATGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45474734	mCV24012064	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss135836820	ENSMUSSNP6090366	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320946570	CHEV_3_126298204	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30859176					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126388935 () rs orientation: forward

Symbol	Name	Function Class
Camk2d	calcium/calmodulin-dependent protein kinase II, delta	1016 bp upstream
Cpgi13785	CpG island 13785	766 bp proximal
Gm17225	predicted gene 17225	within coordinates
Rr367547	regulatory region 367547	862 bp upstream
Rr584646	regulatory region 584646	1175 bp proximal
Rr584647	regulatory region 584647	1600 bp proximal
Rr584648	regulatory region 584648	1712 bp proximal
Tssr31566	transcription start site region 31566	1040 bp upstream
Tssr31567	transcription start site region 31567	1066 bp upstream
Tssr31568	transcription start site region 31568	1122 bp upstream
Tssr31569	transcription start site region 31569	1527 bp upstream
Tssr31570	transcription start site region 31570	1675 bp upstream
Tssr31571	transcription start site region 31571	1707 bp upstream
Tssr31572	transcription start site region 31572	1816 bp upstream
Tssr31573	transcription start site region 31573	1952 bp upstream