rs30858551 SNP Detail

Summary

• ID
  rs30858551
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106695694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTATAAT ACATTCATAG TAGTCTTCTC TCTGAGGGAG
  TCTTTGGAAA ACTCCTGAAC TCCTGTATAT TGTGTGCACT CTCCCTACTT TATAGAAAAG
  W
  GCATATTATT TTGTGTTATG TGTGTCCTAA TATCTGCCCT CCATGGTAAT CTCTTTGTGA
  TTGACAACCA CATCCGTTAA CTTTGTGTTT CTAGAACCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45473947	mCV23492357	ABI	CRAMUS_MOUSE	f	SNP	A	A						A		T
ss46848964	NES10709619	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A		A	A	T	A	A	A	A
ss135580366	ENSMUSSNP3722005	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30858551					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848964	NES10709619	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106695694 () rs orientation: forward

Symbol	Name	Function Class
Cd53	CD53 antigen	Intron
Rr397926	regulatory region 397926	1419 bp upstream
Rr582867	regulatory region 582867	within coordinates
Rr582868	regulatory region 582868	1448 bp proximal
Rr582869	regulatory region 582869	1761 bp proximal
Tssr1002	transcription start site region 1002	351 bp upstream
Tssr1003	transcription start site region 1003	154 bp upstream
Tssr31142	transcription start site region 31142	110 bp downstream
Tssr31143	transcription start site region 31143	381 bp upstream
Tssr31144	transcription start site region 31144	421 bp upstream
Tssr31145	transcription start site region 31145	480 bp upstream
Tssr31146	transcription start site region 31146	1786 bp upstream
Tssr34999	transcription start site region 34999	260 bp upstream
Tssr35000	transcription start site region 35000	190 bp downstream
Tssr35001	transcription start site region 35001	1625 bp downstream
Tssr35002	transcription start site region 35002	1656 bp downstream
Tssr35003	transcription start site region 35003	1669 bp downstream
Tssr35004	transcription start site region 35004	1695 bp downstream
Tssr35005	transcription start site region 35005	1751 bp downstream
Tssr35006	transcription start site region 35006	1765 bp downstream
Tssr35007	transcription start site region 35007	1797 bp downstream