rs30857657 SNP Detail

Summary

• ID
  rs30857657
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50577586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTAAGTT TTGTGTCTTG
  GTCTTATTTG ACTCAGATGA AAAATTAAGT TCTCAAGATG TCCTGTGTAG TTTAAATGTA
  GACAACCACC ACAGAGGAGA GGGGGTTGAA GATGACCAGT ATCAAGATCC CAATGTGTGA
  TCAGATACTT AGAAACATCT GAGGGTGGCT TTGAACTTTC TGTAAAGTAT TGTGATTTGT
  W
  CATTTTTCTA TGTTGTTGGG GCCCAAAATC CCCTGTTATC TCAGTCTCCA TCTTGTCCGT
  GGGCCATCAT CTATTAACTA ACACTCTTTT TTTTTCTTCC ACTATCTTGC TTCCGGAATT
  GACTCAGGAC TTTCTGGACC TTTTACAATG AGGACACTCC TTTTAGGACA TTTTCCAATG
  GGGACATTCC ATTTACATTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45971966	mCV24540458	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss133182414	ENSMUSSNP5709347	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30857657					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50577586 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	952 bp downstream
Gm44054	predicted gene, 44054	366 bp downstream
Rr630048	regulatory region 630048	1656 bp distal
Rr630049	regulatory region 630049	1094 bp proximal
Rr630050	regulatory region 630050	1189 bp proximal