rs30856522 SNP Detail

Summary

• ID
  rs30856522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89233637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATCCTGA CCCCCCCCCC
  ACCCCAAAGC TAGCCTTGCC CTGGATGGGA AAAACCTAGC ATCTAGAAGA AAATAGATGC
  TCACAGGGAC TGTGCATGTC CTTGTGTGCC AGGCGCACCT ATGAGCATGA GCAGGTAAGC
  TCCTGTTGTG TATGCCCACT ACCTGTGCTA CAAACTGATA CAAAGGAGCT CAAGACTGCT
  R
  CAGACATCTC CTGTCACTCA CAGTGTCTGT TCTACTAGGT GAGACCTCAC CCCACACTCT
  CAACAGTTGG AAGAGCTGAA AGTGATCTGC CTGTACACAG CAAGAGGCAG GCAGTGGCCT
  TGGTGGAGAC CTGAGAAGCC TGTGTCTGGG ACATCTGAAA GCCAGAGTGC TGCACAGGAC
  AACGGACAGA GCATCAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45970881	mCV23954868	ABI	CRAMUS_MOUSE	f	SNP		G	A					G
ss47999392	NES11912826	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	A	G	G	G	G	G	G	G	G	A
ss133370808	ENSMUSSNP1171224	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30856522					SNP	G	G	A	G	G	A	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999392	NES11912826	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89233637 () rs orientation: forward

Symbol	Name	Function Class
Gm44204	predicted gene, 44204	1082 bp downstream
Gm66553	predicted gene, 66553	within coordinates
Rr634087	regulatory region 634087	205 bp distal
Rr634088	regulatory region 634088	1537 bp proximal
Tssr62001	transcription start site region 62001	1591 bp downstream