rs30856444 SNP Detail

Summary

• ID
  rs30856444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:94259789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACGA CCTAGAAGTT GGCAAACCAG
  R
  CCTGGGAAGC ATCTCCCCGC TTCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45972517	mCV25240057	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss133399243	ENSMUSSNP1440626	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss321866888	CHEV_6_94232802	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30856444					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94259789 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17759	CpG island 17759			within coordinates
Gm31661	predicted gene, 31661			1203 bp upstream
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr634854	regulatory region 634854			340 bp distal
Rr634855	regulatory region 634855			170 bp proximal
Rr634856	regulatory region 634856			504 bp proximal
Rr634857	regulatory region 634857			1099 bp proximal
Rr634858	regulatory region 634858			1269 bp proximal
Rr634859	regulatory region 634859			1770 bp proximal
Tssr62172	transcription start site region 62172			707 bp downstream
Tssr62173	transcription start site region 62173			767 bp downstream
Tssr62174	transcription start site region 62174			933 bp downstream
Tssr62175	transcription start site region 62175			992 bp downstream
Tssr62176	transcription start site region 62176			1027 bp downstream
Tssr62177	transcription start site region 62177			1040 bp downstream