rs30855064 SNP Detail

Summary

• ID
  rs30855064
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145812958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAACCCAG TTACCGAGGT
  CGTGCTCGTG TGTGTGGCCC CCCACTACTG CTTCCACAAT TACTGTCCAT TGCATATTTT
  ATACAATGAA TACTGTTATT TATATATGCA TAAAATGATC AAGTTTTTTT CTCTATACAA
  AGACATCCTC TTCCAGTGTA AGAGCGATGT CACTTGGAAT GCCAATTCCC TAAGCCCCTT
  Y
  ACTTCCCAGG AGTGGATTTT GCAATTTTGG AAGCATTTAT CAGAAGGTAA TGCTGCTCTC
  TGGTGGTCTG CTTTCTCACT CTGCCTGAAT CAGTCTTGTT CCCCAGTGGT GCTGTGAGGA
  GATGACACAG GACTTCAAAC ACAAGGCTGC CTTGAAGGGT TGCTGTGGAT TCACTCAGCG
  TTCAGCATAC AGTACTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45472909	mCV22937275	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss321009525	CHEV_3_145770167	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30855064					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145812958 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr398111	regulatory region 398111			788 bp upstream
Rr586924	regulatory region 586924			within coordinates
Rr586925	regulatory region 586925			917 bp proximal
Tssr36027	transcription start site region 36027			786 bp downstream
Tssr36028	transcription start site region 36028			806 bp downstream
Tssr36029	transcription start site region 36029			844 bp downstream