rs30855041 SNP Detail

Summary

• ID
  rs30855041
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120898624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCAGCTTC GCATCCAAGA TTTTTTTTTC CACCCACCCC
  CCGCCCCCCT CCCCACAACC AGCCCCATGC CTCCCTCCAC ATTCACCGCT TCCCACCTTC
  S
  GCTCCCAACT ACGGTCTTTT TCAGAAGTTC AACAGCACCC CCTGCTGGAA CTTGGGGGCT
  GCTTCAGCCT GTACACACTG GAGAGGCTCC ATCGAGTCA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45474202	mCV23386867	ABI	CRAMUS_MOUSE	f	SNP		C					C		G
ss60441582	NES15944812	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		G	G	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30855041					SNP	C	C	C	C	C	C	C	G	G	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60441582	NES15944812	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120898624 () rs orientation: forward

Symbol	Name	Function Class
Gm65499	predicted gene, 65499	within coordinates
Rr397968	regulatory region 397968	within coordinates
Rr584004	regulatory region 584004	within coordinates
Rr584005	regulatory region 584005	32 bp proximal