rs30854734 SNP Detail

Summary

• ID
  rs30854734
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36818737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCTGAG TTCTTGAATC
  TGTGCTTAGT TTTAAATTTT TTAAATGAGA ACTAAAGACC ACCCCCTCCA ATGTTTTAAA
  CTTTCTTGTG TGTAAAATGA TGTTTTAAGA AATCAAGGTT CTCATGAATT TTTAAAGATC
  AAATGTTGCC ATGAGACAAA GCCATTTTCA AAATGATGTA AAGAAAATAA CAATGTAATT
  R
  CAGCCCCTTC GGATCTTGAG TCCCTACTAG TGACATGCCT AAAGATCGTC AAATATCCCC
  CACCTAAGTG CTTCCAGATG TTGAAGGTTT GTAACTCTGT ATGCATGTCC ACTGCACTAT
  TTGGCAACTC ATACTTCATC TTCTTTATAT TTAATCAAAA CCCACTGAAA ATTCTGCTTA
  TTATTCCTGG TTTAGCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss45972895	mCV24808967	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss51285909	NES13783688	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	G	A	A
ss133122097	ENSMUSSNP2776968	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30854734					SNP	G	G	A	A	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51285909	NES13783688	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36818737 () rs orientation: forward

Symbol	Name	Function Class
6430604M11Rik	RIKEN cDNA 6430604M11 gene	within coordinates
Rr628572	regulatory region 628572	within coordinates
Rr628573	regulatory region 628573	653 bp proximal
Rr628574	regulatory region 628574	1237 bp proximal