rs30852677 SNP Detail

Summary

• ID
  rs30852677
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153365383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACGATGCT TACCTTGCGA
  ACATACGGGG CGGAATTCAT CCCCAGAGCA TATTACTAAT GTGATGGACC TTTGTTACCA
  AAGAACTGTA CTTAGAAAAG GAAACAAACT TCAGAGAAAT AAAAATCCCA GCAACAGCCC
  CTGGAGTATA GGAGGCCCCG CCACAAGGCT CGTGAAGAAG TGGAACAGAG GCCTCAGCAC
  M
  GTCCACTCAG TCCACTGTCA GCCTGAGACG CCCGCCAAGC TGGCTGGCTG AAAGAACATG
  CTGGGTCTGT TCTGTTTGCT GTAGTTTTCT GAGCAGGCTC CATGGTGAGC GAAGAGGCGA
  ACAGGAATCT TCCATTATCC CTTTCAGCTG AAAAGAAACC TCACCACAGA ATGCACTTAC
  TGTGAAAGTT GGTACAAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45472798	mCV24207542	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30852677					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153365383 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			886 bp distal
Rr587720	regulatory region 587720			1153 bp distal
Rr587721	regulatory region 587721			within coordinates
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant