rs30852518 SNP Detail

Summary

• ID
  rs30852518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72303667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGCTGTGT AGGAGCTGGA GATTGAACCT AGGTTCTTAC
  AAGAACAACT CTTAATCCCC GAGCCATCTT TCCAGCACTG TGAATAGTTT TTCTTTCTTT
  Y
  TTTTTTTTTT TTTTTTTTTT TGGTCTTTCG AGACAGGGCT TCTCTGTGTG GCTGTCCTCG
  AACTTAGAAA TCCACCTGCC TCTGCCTCCC AAGTGCTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss45971319	mCV25198209	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss133283838	ENSMUSSNP5527397	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs30852518					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72303667 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr632132	regulatory region 632132			1555 bp distal
Rr632133	regulatory region 632133			41 bp distal
Rr632134	regulatory region 632134			131 bp distal
Rr632135	regulatory region 632135			204 bp proximal
Usp39	ubiquitin specific peptidase 39			Intron
				Noncoding-Transcript-Variant