rs30852336 SNP Detail

Summary

• ID
  rs30852336
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108449198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAATCTCCCT TCAAAACCAA AAGAAAAGTA CTGGTGGTGA AGGGGTGAGT TTAGGAGTCA
  CACAGCCTTG AGCAAATTAA TTAACCACAC TGAACTCAAC TTCCCAAGGT TAGTGCTAGA
  TTTGTCAATC AAGTAACTGT TGACATTTGG AGAATGTTCC TTGCAGAGGC TATAGGATAT
  TGAGCAATAT TTGTGACCTT TAGCTTGTTA GATGCCACTC ACACACCCAT ATGCCCAACC
  GAAAATGTCT CCAGGTATTT CCACTTCGCT GCTGGGGAAA GTTAGGGAGA AAAAAAAAAA
  M
  AAAAACCACT TTCACTACTG TCTGAGAACC ACTAGTCTAG AAGGGAGTAT AAAGAGAAGG
  AGAGAAAAAT AAACCTACCA AGTCCCGCTG AGTACTGAAT ATGAACCAGG TGTACGTTAG
  CCATCTTTCT GTTGCAGTAA TAAATACCTG AGGTATATAA ACCAAGGACC AGGGAATTTC
  TGTCTGAGTT CAGACTAATT GAGGTTTCAG TCTAGTTGCT TTGGGACCCA CCTTGGAGCA
  GCACATACCT ACTAGAGCAG AGAGCAGAGG GTAAAACTGT TCACCTCACG GCAGAGAATC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45971609	mCV24650734	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30852336					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108449198 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Gm44101	predicted gene, 44101	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636115	regulatory region 636115	22 bp distal
Rr636116	regulatory region 636116	295 bp proximal
Rr636117	regulatory region 636117	578 bp proximal
Tssr58061	transcription start site region 58061	796 bp upstream
Tssr58062	transcription start site region 58062	830 bp upstream
Tssr58063	transcription start site region 58063	847 bp upstream
Tssr58064	transcription start site region 58064	878 bp upstream
Tssr62385	transcription start site region 62385	573 bp upstream
Tssr62386	transcription start site region 62386	299 bp downstream