rs30852088 SNP Detail

Summary

• ID
  rs30852088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82936535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCCAACCA GGATTTTACA AACAGAATCA ACAAGCTCAA
  AAACTCACTA TTTGACTTTC AAAGGAACAA CAAGGATTCT AACTCACTGA CCAGGAATAT
  Y
  ATGGAGTATT TGAGAGGGGA CTTCGCGAAT GCCAACAGTA AGTGAGACAT ATTTAGTAGT
  TGGACTTTCT AACAAGTATG GTAACAAAAG TCCCAAATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45472711	mCV23187606	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				C		T
ss50990100	NES13925785	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		C	T	C	C		C	T	C		C
ss135410280	ENSMUSSNP4150626	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss320820859	CHEV_3_82833150	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30852088					SNP	T	T	T	T	T	T	C	C	T	C	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990100	NES13925785	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82936535 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Coding-Synonymous
Rr375250	regulatory region 375250	within coordinates
Tssr29661	transcription start site region 29661	680 bp downstream
Tssr29662	transcription start site region 29662	631 bp downstream
Tssr29663	transcription start site region 29663	614 bp downstream
Tssr29664	transcription start site region 29664	131 bp downstream
Tssr29665	transcription start site region 29665	92 bp downstream
Tssr29666	transcription start site region 29666	56 bp downstream
Tssr29667	transcription start site region 29667	13 bp downstream
Tssr29668	transcription start site region 29668	970 bp upstream
Tssr29669	transcription start site region 29669	1014 bp upstream
Tssr29670	transcription start site region 29670	1058 bp upstream
Tssr29671	transcription start site region 29671	1602 bp upstream
Tssr29672	transcription start site region 29672	1705 bp upstream
Tssr29673	transcription start site region 29673	1733 bp upstream
Tssr29674	transcription start site region 29674	1782 bp upstream
Tssr29675	transcription start site region 29675	1792 bp upstream
Tssr29676	transcription start site region 29676	1802 bp upstream
Tssr29677	transcription start site region 29677	1819 bp upstream
Tssr29678	transcription start site region 29678	1898 bp upstream
Tssr29679	transcription start site region 29679	1942 bp upstream
Tssr29680	transcription start site region 29680	1965 bp upstream
Tssr33800	transcription start site region 33800	1874 bp downstream