rs30851808 SNP Detail

Summary

• ID
  rs30851808
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56879925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGATGGC AGTATGCTAA
  CACTGCACCA GGGCCTGCTA GATAAGGTGG CACTCGGGTT CCGGGAACTT TATCATTAGG
  GCCATGGTTA AGCAGTTTAC ATGTAAATAA ATTTTTCTAT TGGCTCTCTC TACTGTGTTC
  AGAGAGATCT AACGCCAAGC TATATTTTAC TAATTAAACT TTGTGAAGTA GCAAGTCCTT
  Y
  TTTTCAGAGA AAGGCTCTCA ATAGATTGTT CAGGCTGGGC TCAAGTGATC ATCCTGCCTC
  CACAGCCTCC AGTAGCCAGA CCTGTCCACC TCACGTCCAC ATTACCATAG GAGCTCTTGG
  GCTGCCTTGG GCAGGAGAGG GCGGTGACAG AATACAAGGT CTCACTATAC AGCACTGGCT
  AGACTGCCAC CACTACCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45969757	mCV23495480	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss133233753	ENSMUSSNP3373317	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs30851808					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56879925 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr379412	regulatory region 379412			120 bp downstream
Rr631115	regulatory region 631115			1307 bp distal
Rr631116	regulatory region 631116			564 bp distal
Rr631117	regulatory region 631117			127 bp proximal
Rr631118	regulatory region 631118			211 bp proximal
Rr631119	regulatory region 631119			437 bp proximal
Rr631120	regulatory region 631120			749 bp proximal
Rr631121	regulatory region 631121			1951 bp proximal
Tssr1860	transcription start site region 1860			796 bp upstream
Tssr61149	transcription start site region 61149			1102 bp upstream
Tssr61150	transcription start site region 61150			1049 bp upstream
Tssr61151	transcription start site region 61151			1021 bp upstream