rs30849763 SNP Detail

Summary

• ID
  rs30849763
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19684351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATG GTATCTGCAC CAGAATCCAG
  W
  CACTTCCTGA GGTCAGCAAT CCAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45472081	mCV24689007	ABI	CRAMUS_MOUSE	f	SNP		T	A						T
ss60376849	NES15884499	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	A	T	T	A	A		T	T	T		T
ss134669399	ENSMUSSNP5372691	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
ss320679310	CHEV_3_19530187	CHEVERUD	SCREENING_POP	f	SNP												A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30849763					SNP	T	T	A	A	A	T	A	T	T	A	A	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376849	NES15884499	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19684351 () rs orientation: forward

Symbol	Name	Function Class
1700064H15Rik	RIKEN cDNA 1700064H15 gene	1454 bp upstream
n-TAagc14	nuclear encoded tRNA alanine 14 (anticodon AGC)	1120 bp downstream
n-TYgta1	nuclear encoded tRNA tyrosine 1 (anticodon GTA)	1740 bp downstream
n-TYgta2	nuclear encoded tRNA tyrosine 2 (anticodon GTA)	1317 bp downstream
Rr574008	regulatory region 574008	1521 bp distal
Rr574009	regulatory region 574009	964 bp distal
Rr574010	regulatory region 574010	37 bp proximal
Tssr32702	transcription start site region 32702	1502 bp upstream