rs30849146 SNP Detail

Summary

• ID
  rs30849146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145122785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCCTCC GTATCTTCTC
  CCCTTCTTTT CTTATTTATC TTGAGACTTG AAACAAACAC GTAAAAGGTC ACCGATTTGT
  CTGTGTTAAA TACAATGTGA GGATTTCCCA TCATCTCAAT ATTTTAACTA AGAAACCACC
  AGCCAATTTA CACAGTGCCT TCCTTCTACA AATATTTATG ATCATTTGCA TACTCAAGGG
  Y
  GAGAGCAAAC TGAACAGGAC ACTGCACCCA CTTCAAAGAC CTCATGCAAG ATTAGGATGC
  CAATGTGAGT ATTAAAGGGA AAAGGCTCTG CCTGCTGCAG AGATTATCAG TAAGCCGGAT
  CCGGTGGATC CAGAACACTG GATAAAATTC CTCAGTAGAA AAATCTTTAA CTCTATTTCT
  ATATAAATAT GAACATCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45471966	mCV23543932	ABI	CRAMUS_MOUSE	f	SNP		C	C						T
ss61093862	NES16613567	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	T	T	T		T	C	C	T		C
ss136038410	ENSMUSSNP2531627	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						T
ss321008288	CHEV_3_145079994	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30849146					SNP	C	C	C	C	C	C	C	T	T	T	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61093862	NES16613567	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145122785 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr586779	regulatory region 586779			884 bp proximal
Rr586780	regulatory region 586780			1004 bp proximal