rs30848947 SNP Detail

Summary

• ID
  rs30848947
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171809155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGC TCATACAATA AACAAAATTG
  M
  TATTTTTCTG TCCTTATTTG CAAGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44969537	mCV25391376	ABI	CRAMUS_MOUSE	f	SNP		C					A		C
ss49748138	NES13029837	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C		C	C	C	C		A	C	C	C		C
ss120005047	PARCsnp_1.16601	PARC_SEQ	INBRED	f	SNP							A		C
ss120007698	PARCsnp_1.06116	PARC_SEQ	INBRED	f	SNP							A		C
ss320121971	CHEV_1_173911719	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30848947					SNP	C	C	C	C	A	C	A	C	C	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49748138	NES13029837	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171809155 () rs orientation: forward

Symbol	Name	Function Class
Rr396575	regulatory region 396575	683 bp upstream
Rr423419	regulatory region 423419	684 bp distal
Rr423420	regulatory region 423420	514 bp proximal