rs30846804 SNP Detail

Summary

• ID
  rs30846804
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101192122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAAGAAA CTGCCTGTCT
  TTCTAGAGTG AAAAACCTTC TTCGTAGTAA GATCCAATTA TTTCAAGAAA CACTGATCAA
  ATTTTAAAAG GCTTTAAAGG CAGTTGGAGA TCACCTACAG TTCTGTTATT CGGGACTATT
  AACACTTTGA GGCATATCTT TATCGGATAT TTTCTATGCA TAAACCCATA ATATATTTTT
  K
  CAAATTAAAA CTGGATTATG AACCTGGGAG TCAGAGAGCT GCGCTCGCTG AGGGTTGAAT
  CCATAACTCA GGCATTAAGG CAAAAGCTCT ACCACTGCAC TATGTCCCCA GCCCCTGGAT
  CACGTGACTT CATAACCCAC CTTCAATCCT TTACTCTGAA ATTGTACCAT TATGGCCCCC
  TTTCATGGGC ACCAGGACAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45471739	mCV22287079	ABI	CRAMUS_MOUSE	f	SNP		T	G			T
ss46813199	NES10715771	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	T		T	T	T	T	T	T	T
ss135546250	ENSMUSSNP5964689	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30846804					SNP	T	T	G	G	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813199	NES10715771	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101192122 () rs orientation: forward

Symbol	Name	Function Class
Cd2	CD2 antigen	Intron
Rr581990	regulatory region 581990	1200 bp distal
Rr581991	regulatory region 581991	975 bp proximal
Tssr30894	transcription start site region 30894	649 bp downstream
Tssr30895	transcription start site region 30895	1759 bp upstream
Tssr30896	transcription start site region 30896	1834 bp upstream
Tssr30897	transcription start site region 30897	1869 bp upstream
Tssr34778	transcription start site region 34778	1645 bp upstream
Tssr34779	transcription start site region 34779	837 bp upstream