rs30846716 SNP Detail

Summary

• ID
  rs30846716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172316431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTTTTGTGA GCCTCCAGCG GTGCCAGGTG CTACACACCT CCCCTGCATC ATCTCCTGCC
  TTCCACCCCA TCCCAGTTTC TCCCTCTCTT ATTTTGACTG AGGAAACTGA AATTGACAGG
  TTGAGTAACT TGTTCAAAGG AGCATGTGGC TGAGCTGGGC TTGTGCCTGG GTTCTTTGGG
  GCTGCCACGC AAGCGCCTTA CTGCACTGCT AGGGATGTTT CAGGCTGTCA GGGTGCCGGG
  TTCCCTCAGA GGAGGGTCCT GAGGGACTGG GTGAGCACAT CTCAGTCAGC CTAGCGGTCT
  R
  CTATGGATGC TGGGAACGAA AGGTCTTTTT TGTGCTGTGG TGTGTGGCTT TGTGGGGCTG
  CATGTGGTCA GTCAGCTGGG GCGTAGAGGG GCTGGGCTGG GCTGGGGAGG CTGCTGACGC
  TGCTGCCTGC CTGGGTTGGA CTCTGGCCAC TCTAAGGCGC TTAGGCCGCT GATAATAGCT
  CTGGGAGATT ACAGGCTTTG GTAGATGAGG TATGGGTCCC TGGGAGGGCC CCAAACACAG
  CTAGCGATTT CAGGGACAGA GTCCTCTAAA AGCAGTAGTA TCCCCAGAGA ACTTATATCT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss44968953	mCV23003975	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss146193525	ENSMUSSNP4459844	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30846716					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172316431 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			1649 bp proximal
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423586	regulatory region 423586			1971 bp distal
Rr423587	regulatory region 423587			within coordinates
Rr423588	regulatory region 423588			823 bp proximal
Rr423589	regulatory region 423589			1703 bp proximal
Rr423590	regulatory region 423590			1882 bp proximal