rs30845855 SNP Detail

Summary

• ID
  rs30845855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:120018060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTAGCTTTA CTAGGAAAAC AGATACAATG GTGAGTATCG TCGCTGTGTG GGACGGTTAG
  ACTTAAAGGT TGAACTATAG TATGGAGATT TACTACGCTC ACATGTTCAT CTCTCTTTAT
  AATGATTAAA TCCGTACTAA GTTCCCTGTT ATTCTTGACT ATAATTCCAG ATCATACTTT
  CCCTTTCTCT GGAGTTTGTT TTCAAGTTCT CTCCCGTCCA CACAAACCAG CAAGAGACTA
  AATAGAAGTG TGTGGAACGG ACAGCCAGGG TTATACAGAG AAACCCTGTC TTAAAAAAGC
  Y
  AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGGAAGAAA GAAGTGTGTG
  GAAGAGCTTA GTATACACAA ATGCACTCAG AATGAACATC TGAAGCACTG GCATTTGGGT
  GACCAAGAAT GCAAATCTGT TTTTCTTCTT CAGTGTGTTG ATTCATGCTT CTCTCTTCCC
  ATTGATAACT TACAGGCAAT AAAAGTCGGC AACAGCTTTA AGGTAGACAG TGGCTGAAAT
  GAACTGAACA CATACTTGAT CTAGAGTATG GTACAGTTCC CGGTAGCTTC CTGGATGTGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45969886	mCV24680851	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30845855					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120018060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17917	CpG island 17917	1066 bp distal
Gm66353	predicted gene, 66353	within coordinates
Rr399864	regulatory region 399864	1194 bp downstream
Rr637761	regulatory region 637761	870 bp distal
Rr637762	regulatory region 637762	1293 bp distal
Rr637763	regulatory region 637763	1632 bp proximal
Tssr58518	transcription start site region 58518	1173 bp downstream