rs30845850 SNP Detail

Summary

• ID
  rs30845850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127623082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTGTTAC CCTAGAGAGA
  TCTCCACTGT CCAGTATGAC AGCCACTAGC ACTTGAGATG CAACCAGTCT GAATTTGGAG
  GGCTATAAAG TGTCAAATTG AACTGGATTC CAAAGAGAGT ACAAAAGTAA CTGAAATATC
  TCCTCGAGTA ACTAAGCTCT GCAGCATATC TGCATGACTA GATATGACGA ACGTTCTGAT
  Y
  GCCTTTGATT TGTCCTCTAT GTTTAATTCA TCAGTTCCAC AGCCGAAAAC GCTGCCACAC
  ATCCAGTACT AAGTGTGCGG CTTTGAGGCT AAACATGCTC ACTGTATATG TAACGCCATT
  CCCATAAGTG CTTCTGTACA TAAGACATGA CTACATCTTT CATACCATTT TCACCAGACA
  CTGGTAGTGG CTAGAACTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45471735	mCV23993994	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	C
ss135872294	ENSMUSSNP296460	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss320957252	CHEV_3_127532351	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30845850					SNP	T	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127623082 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	122 bp downstream
Rr584870	regulatory region 584870	1917 bp distal
Rr584871	regulatory region 584871	786 bp proximal
Rr584872	regulatory region 584872	1376 bp proximal