rs30845662 SNP Detail

Summary

• ID
  rs30845662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125198763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAATTGCC CAAGATGAGA
  ACTCTTCTCC TTGGGACATA AGATTTATAG GTGTTCTCTG TTTTGATGGA ATTTTGAGAG
  AAACAGCTGG CACACACATT TGAAACTGAA CGACACTGGC ATATGCTGTT TATCAGGAAA
  TAGATGCTAT CCCCTAGCTC ATATTAGAAA TGAAAACATC TCAGGGTAAT ATATGTCATA
  Y
  TCATATCCTA GATTGTGAGC AGGACACCGA CACCTCAGTG CCGTATTCAC ACACACACAC
  GCACACACAT ATACACACAC ACACTTCCAA AGCCCCCTAC ACAAAACACA TTGGAAAATG
  CGAGATGTTT AAAGGTGGTC TTAGTGTTTC TAATACTTAT ATCAGAAGAA ATCAAAGTTT
  AAAAATATTA AAAATTGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45470750	mCV24033298	ABI	CRAMUS_MOUSE	f	SNP	T	C				T		T
ss61078005	NES16589258	PERLEGEN	MM_PANEL2	f	SNP		C	C	T	C		C	T	T	T		C	T	T	C		T
ss135807842	ENSMUSSNP7203830	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C						T
ss320936169	CHEV_3_125108032	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30845662					SNP	T	C	C	T	C	T	C	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61078005	NES16589258	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125198763 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584608	regulatory region 584608	1028 bp distal
Rr584609	regulatory region 584609	410 bp distal
Tssr31558	transcription start site region 31558	983 bp downstream
Tssr31559	transcription start site region 31559	774 bp downstream