rs30845143 SNP Detail

Summary

• ID
  rs30845143
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137045099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGAAATCTG TGACTGCGGA ATTCAGGAAT CTTCTGACTC
  CATTCTTCAC ACAAGCACTG TGTTCAGGGG TCGGGCTGTG CAACCATCCT GTATAAAGCA
  R
  TCATCACTAA GAGCAAAGAG GCTACTGGTT GGTGTTTGGT CCTACAGAAC ACACAGTTCG
  GAACATCACC AATGCCCTAT GACAGCTGAT GCCACCTAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46990365	NES10869401	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G		G	G
ss135939682	ENSMUSSNP2069497	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					A
ss320975383	CHEV_3_137002302	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30845143					SNP	G	G	G	G	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46990365	NES10869401	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137045099 () rs orientation: forward

Symbol	Name	Function Class
Emcn	endomucin	1725 bp upstream
Rr585936	regulatory region 585936	1449 bp proximal
Tssr31897	transcription start site region 31897	1694 bp upstream
Tssr31898	transcription start site region 31898	1738 bp upstream
Tssr31899	transcription start site region 31899	1765 bp upstream
Tssr31900	transcription start site region 31900	1809 bp upstream
Tssr31901	transcription start site region 31901	1841 bp upstream
Tssr31902	transcription start site region 31902	1874 bp upstream