rs30844880 SNP Detail

Summary

• ID
  rs30844880
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138357079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAGAACTCTC AGCTCCTCTT GCATCATGCC TGCCTGGATG CTGCCATCCT CTTTCCTTGA
  CAATAATGAA CTGAATGTCT GAACCTGTAA GCTAGCCCCA GTTAAATGCT GTCCTTATAA
  GAGTTGCCTT GCAGCTAGGT GTGGTGGCAT ATGCCTTTAA TCCCAGCACT CGGGAGGCAG
  AGGCAGGCAG ATCTCTAAGT TCCAGGCCAA CCTGGTCTAC AAAGTGAGTT CCAGGACAGC
  CAGGGCTATA CAGAGAAACC CTGTCTCGAA AAACCAAAAA AAACAAAAAA AACAAAAAAA
  M
  CAAAAAAAAA ACAAGAGTTG CCTTGGTCAT GGTGTCTGTT CATAGCAATA AGACAGTGGG
  TCACAGCTGG GAAGGCATGG CAGGGTTCCT GGTGGTGAGA ATGCCTGGCT GGGACCCCTT
  CCATGGGTCA GGACACAGAG GGCAGGGGAT TCTGGAACTC TGCTGGGTTT CTCACTCTTC
  CCCTTGTCTT GAGTTTCAAT CTCCAGCCCA TAGCTTGGTT CCACCCACAT GCAGGGTTGG
  CCTTCCCTGC TCAGTTAATC ATTTCTGCCA ACACTCTCAC CGGGCACACC CAGAGATCGG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45470838	mCV22920400	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
ss135955800	ENSMUSSNP6953545	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30844880					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138357079 () rs orientation: forward

Symbol	Name	Function Class
Rr586176	regulatory region 586176	124 bp proximal
Rr586177	regulatory region 586177	480 bp proximal
Rr586178	regulatory region 586178	1444 bp proximal