rs30844073 SNP Detail

Summary

• ID
  rs30844073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146800532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGGGTGGG GGTGGCCTGC AGGAGCAGCC TTGGGAATTG
  TTAAAACTCA GGGCGGGGCA GAGCTTGTCA CACAGTTTGG CTTCCTGACA TAGAGTGGTG
  R
  TAGCCACATG CTGGCTACAT TACCTGAGTG TGAACCTGCC TCAGCTCTTG CATGTCTCAT
  ACTGCTGACC TGTGCCATAG TCTTCTTATG TGCAAAGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45470036	mCV23261509	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss61096389	NES16600626	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A	G	A	A		A	A	A	A		A
ss136047150	ENSMUSSNP5212941	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss321011275	CHEV_3_146757741	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30844073					SNP	G	G	G	G	G	G	A	A	G	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096389	NES16600626	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146800532 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	within coordinates
Gm65947	predicted gene, 65947	992 bp downstream
Rr375880	regulatory region 375880	881 bp downstream
Rr587123	regulatory region 587123	1319 bp distal