rs30843797 SNP Detail

Summary

• ID
  rs30843797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152633853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTGAAA AATAAATTCT
  GCACAAGGGG TGGCATTAAA AGGGAAAAAA AGAAATATAA TGTGATTTTC CTCCTATGCA
  GGCACAGCGT TAGCTTCCTT TTATTAATCC GAGCAATGAA AATCACTTTG ACACATTGTT
  GTTATTTATT ATTTATTTTC ACATCTTTCT TTAAAAGGCG GGGTGTGTCC ATTTTAACAC
  R
  CTGCTAGAGT CTTCAGAGTC TGTGAGACTG AGTACACAGA ACCAAGCCCA GGACGACACG
  CTGCGGAGCC AGCTCCTCAC GCAACCATGT TTATTGCGTG CCCGCTGGCC TGGAGTGCAG
  AAGTAACTCC TATTAAATTA GCAATCAAGC AAAGCAAAGC TTGAGTCACA GAACAACCCA
  AAGCACAATG GGATGAACGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45470722	mCV22358379	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss136104945	ENSMUSSNP3068189	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss321029241	CHEV_3_152591180	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30843797					SNP	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152633853 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	678 bp upstream
Rr587626	regulatory region 587626	1670 bp distal
Rr587627	regulatory region 587627	234 bp proximal
Rr587628	regulatory region 587628	689 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	673 bp upstream
Tssr32428	transcription start site region 32428	1828 bp upstream