rs30842894 SNP Detail

Summary

• ID
  rs30842894
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57757185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGG GTGCTCTTCT ACCAGGTCCC
  R
  GGTTCAGTTC TCAGCATCTA TATGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45470708	mCV24482052	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss135204818	ENSMUSSNP6156837	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			A
ss320781807	CHEV_3_57653686	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30842894					SNP	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57757185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13199	CpG island 13199	1491 bp distal
Gm66316	predicted gene, 66316	within coordinates
Rr577169	regulatory region 577169	1725 bp distal
Rr577170	regulatory region 577170	1651 bp distal
Rr577171	regulatory region 577171	953 bp distal
Tssr33342	transcription start site region 33342	1929 bp upstream
Tssr33343	transcription start site region 33343	1666 bp upstream