rs30842596 SNP Detail

Summary

• ID
  rs30842596
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121998985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGCCATT TACTGACCAA TCGGGATTAC TGGGGAGCAT
  CACAGTACGT AGGTGATACA GTGCTCCAAG ATCAGATTGC AATTTGGAGA GGGGCACAAA
  W
  CTCAGCTTCC GAATACACAA CACACAAGAC AAACCCCAAC AATTCCTTCT GAGCATAAGT
  ATAAAAAGGA ATTTTTTCAA GTGTTTAGAA AGCAAGTGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45469813	mCV23981055	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss135737024	ENSMUSSNP5451897	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		T
ss320909590	CHEV_3_121908254	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30842596					SNP	A	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121998985 () rs orientation: forward

Symbol	Name	Function Class
D3Jor1	DNA segment, Chr 3, Barbara Jordan 1	740 bp distal
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584258	regulatory region 584258	1691 bp distal
Rr584259	regulatory region 584259	554 bp proximal