rs30842406 SNP Detail

Summary

• ID
  rs30842406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102181521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCTCCAA AACTCCTAAG
  GAAACATTAT CGGACACTGG TGAGACCATC AGAGGAGTCT TGTCATTAGG GCTGCGTCCT
  CATGAAGGGA CCCGTGTGTT CTTGCAGGTG GTAGTTGGCT TGGGAGGCAT GGATGGTTAA
  GAGCAGCTTG AGCAGAGGGA GCTCAGCTTC CTCTGGCCCT GCTTGCTTCT CCCACCATGG
  R
  ACCTTCTGCT CTTCCACCAT GGTACTAGGT AGCAGGAGGC CTTCAGCAGA AGCTGAACAG
  TCCCCAGCAC CTTGCTCTTA GACTTCCCAG CCTCCAGAGC TGTGAACTAA ATCAGGTTTT
  ATTCTTTATG TATTATTGAG TCTCAGGTAA TCTGGGATTG TCACAGAAAA CAGATCACAA
  CACCGTTCAT CTCTACATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45470113	mCV25068819	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A		A
ss51586202	NES14666181	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G		G	A	A	A		G	A	A	G		A
ss135555682	ENSMUSSNP1174422	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss320855291	CHEV_3_102078128	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30842406					SNP	A	A	G	A	G	A	G	A	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51586202	NES14666181	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102181521 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	1049 bp proximal
Rr582220	regulatory region 582220	1529 bp proximal
Rr582221	regulatory region 582221	1784 bp proximal