rs30842105 SNP Detail

Summary

• ID
  rs30842105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153441016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATAAACT CAGTCAAGTG
  GAAAATCACA TAAAAGACAT TCATGAGGGA GTGCTGGATG GATGTGAGCC GCCCCAAATA
  ATTTGTCAAT GAGTTCAAAA ATAATAAGCA ATTTTAAACC ATTTCCAAAT TTAATATTTA
  TTATTTCTCC TTCAGCCCTG GGCATTACAT TCCATTAAAA TATGCTCCGT GCATTAAAAA
  Y
  GAAATGCTTA GCCATTAATT TTAAATATCC TTTATTTTCC TTCCATTTTC TTCTGTGTCC
  CAGCCCCATC CTTGATGTCT TTCTCTTGGC CAGAGACTGT GTAACTTAGC ACTAGGCGGC
  TGCATACACA GTGGTGATTG TCAACTAATA AACAGACTAT TCTCTTTTCC ACGTTCTGGG
  TGCTCATGGT TCCCCGATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45470798	mCV23504368	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136111956	ENSMUSSNP6290730	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30842105					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153441016 () rs orientation: forward

Symbol	Name	Function Class
Rr587744	regulatory region 587744	935 bp distal
Rr587745	regulatory region 587745	1451 bp proximal
Tssr36241	transcription start site region 36241	1450 bp upstream