rs30841789 SNP Detail

Summary

• ID
  rs30841789
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152634609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAAGCTC TTAGGCCACT
  TTTAGGAAGG CCTTGCTGTC AACAACAGGA AGTGGGAGGA GGGGTTGGGG GTGGACTCTC
  TTATCTCAGA CAATATGTGG AATTGCACCT GACTGACAAA GCCACTGAAG AAGCTGGTGA
  TAATATTATT ACAGTAGCTA CCATATGTCT TACATCAAAT GCGGCTCTAG CTTTATCATT
  W
  TCACTGGGGC TCTCTAGAAG GAGATGGGAG AGAGCTGCCG CAGAGATCTG GCTCTCCACT
  GAAATGCAGG CTTCCTGCTC CTCTATAAAG GAAACAACTA AAACTCCATT TGCATCAAGA
  ACCGAGAGCC CTAGGTTAAT TACAGGTAAG GGTATGTTTA CATTCCCCAG GGCTAGCTAC
  TGACAGGTTT TATTTCTGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45470302	mCV22358391	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss136104954	ENSMUSSNP589280	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321029244	CHEV_3_152591936	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30841789					SNP	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152634609 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	within coordinates
Rr587627	regulatory region 587627	68 bp distal
Rr587628	regulatory region 587628	within coordinates
Rr587629	regulatory region 587629	1309 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	72 bp downstream
Tssr32428	transcription start site region 32428	1072 bp upstream