rs30840114 SNP Detail

Summary

• ID
  rs30840114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:120947302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACAGATGTGT GCTCTGCCGG AACTTTCATT TTTACCCTCT GCAGCAAAGC CGCTGCTGGG
  GAGGGAAAGC CCTTTGGCCA GAGAGCTCAT GCTGCATGCT GGCATGGTGG CGGGGGTTCT
  GACACAGGGA ACGTGGTCAG CGTGGAGGGT GAGGACAGCA GCTAGAAGAC GAAGCAGAGA
  TCTGTCCTGT GAAGTCTGGA ACTCCAGTAT TCAGGCAGGA GTGAGGCCAA AGCTTCTTCC
  CTAATGTGGG TCAAGCCCTT CCTTCCTTGC AGGCTGCATC TGAAGCCCTT CTGACCCCTC
  Y
  GGGCATGAGA TCTGCCTCTC AGCTATAGAA AATCCCAGCA GCGCCCCCTG CATTCACCCT
  TGCTGCCAGA GCAGGTGGAA GTCACATGCA GCCCCTGCCC CGAAGGACCC TCTCATTAGT
  GCTTGCTTGG GTCATGCCAC ACAGTAGGGT TAAGATAGCG GGACAGCCAG TGACTACGGA
  GCGTGGGTGT GGGCACTGAG GAAGAAAGGG CAGCTATTTC GGCAGTAAGA GCAGGTGCCA
  CTGACCTGAA GGACTCTGTG GCTTCAGGCT GAAGCCAGCT CCCATCTGGG AGTGTCTGTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45969416	mCV23185929	ABI	CRAMUS_MOUSE	f	SNP	T	T					C		C
ss48083308	NES11864039	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T		T		C	C		T	T	C		C
ss133599092	ENSMUSSNP5840222	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321931041	CHEV_6_120920359	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30840114					SNP	T	T	T	T	C	T	C	T	C	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48083308	NES11864039	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:120947302 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43915	predicted gene, 43915			within coordinates
Mical3	microtubule associated monooxygenase, calponin and LIM domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr637997	regulatory region 637997			38 bp proximal
Rr637998	regulatory region 637998			1498 bp proximal
Tssr62789	transcription start site region 62789			1057 bp downstream
Tssr62790	transcription start site region 62790			1268 bp downstream