rs30835680 SNP Detail

Summary

• ID
  rs30835680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135107021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG AATGATCTCC AGCCGCAGTC
  R
  GAGCTTATTC CAACACCACT GCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss49675350	NES12974099	PERLEGEN	MM_PANEL2	f	SNP			G	A		A	A	A
ss145526719	ENSMUSSNP6105701	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss319988313	CHEV_1_137075860	CHEVERUD	SCREENING_POP	f	SNP					A				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30835680					SNP	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49675350	NES12974099	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135107021 () rs orientation: forward

Symbol	Name	Function Class
Rr419094	regulatory region 419094	within coordinates
Rr419095	regulatory region 419095	1379 bp proximal
Tssr13831	transcription start site region 13831	1603 bp downstream