rs30833011 SNP Detail

Summary

• ID
  rs30833011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130299601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACCATGA GTATATCTCT
  TTATCACAAT GTATACCTAG CTCCTGACTC AGAGGCACAG TTGTAAGCCT TTCAGAACTG
  AAATTCTCTC TTCATGGTTG CACATCTTTC TTTAATGAGG GACTCACAAA TCGCAGTAAA
  GTCAAAAACA TCAGTTAGAT GCACTTTACT CCAGAGTCCC CATTATTAAG CTTTTCGTGG
  Y
  TGTAGTATAT TTTCTGAATA TAATTTATTC GATGCAATAG TTGACAAACA TTCCAAAGGT
  GAAACAATAA ATATAATAAG ACTACCTTAG GTAATATATG TTGTAATGAG GCAAAAATCA
  TAAGACAGTA ATAAAGATAA AATGAAGGAT AAATGATAAT CTACGCATAT TGGCATTGGA
  AATATGACTG TAAAATGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49674837	NES12991683	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30833011					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49674837	NES12991683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130299601 () rs orientation: forward

Symbol	Name	Function Class
Rr417908	regulatory region 417908	357 bp proximal
Rr417909	regulatory region 417909	464 bp proximal
Rr417910	regulatory region 417910	1913 bp proximal