rs30833009 SNP Detail

Summary

• ID
  rs30833009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130299823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAATAAGA CTACCTTAGG TAATATATGT
  TGTAATGAGG CAAAAATCAT AAGACAGTAA TAAAGATAAA ATGAAGGATA AATGATAATC
  TACGCATATT GGCATTGGAA ATATGACTGT AAAATGGGGA CGGGGTTGCC TCCCCATCTG
  R
  TGGAGGTCCA CGGGCCCAGC CTGGGCTGCA GCAGTGTTCA CAGCTACTCA GAGAGATTCC
  AGATCCTCTA AAGGATTGTT TTCCATTGTT TTCAAGCTAC AATTTTCTCC TCATTTAAAA
  GGGGAAAATA GTAAAAGAGG AAAGAAGGAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss49674835	NES12991685	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G		A	G	A
ss319971987	CHEV_1_132268663	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30833009					SNP	G	G	G	G	A	G	G	G	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49674835	NES12991685	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130299823 () rs orientation: forward

Symbol	Name	Function Class
Rr417908	regulatory region 417908	135 bp proximal
Rr417909	regulatory region 417909	242 bp proximal
Rr417910	regulatory region 417910	1691 bp proximal