rs30832196 SNP Detail

Summary

• ID
  rs30832196
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130301074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATAATGTA GAAAAACAAT
  TGTAAGGATG GATCCAATGA TGGAAGAAAT GAAAGACAAA GCAGTAGGAG GTTGTAACCA
  CTGAGTACCA ACAGTGTCGA ATTAAAAAGG AGGAAAGCAA AATTATGAGG CCTGACCAGA
  TCTCTCTGCG CTCTTTGCAC TGCAGCTGGG TGATTGTGGG TCTCCCCTCC AGCTCATCAG
  S
  AACCTAGGCA CAAGCCTGAG TAACTTGCTG TTCCTTTTAA AGTCTAATCC AGTTTTTATT
  TTGGATTGTT CCTTATCATT TGGAGGCTCT ATGCATTCCT GGGGGCATTT AAGATGAGGC
  AGGTAGCCAA AAAATGAATC ACTGTTCTTT TTCAGGCTAA GGTCAGTGGG GGACTGAGGA
  GGAATCCCAT GGCTGCTTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49674822	NES12991700	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30832196					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49674822	NES12991700	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130301074 () rs orientation: forward

Symbol	Name	Function Class
Rr417908	regulatory region 417908	890 bp distal
Rr417909	regulatory region 417909	988 bp distal
Rr417910	regulatory region 417910	440 bp proximal