rs30831348 SNP Detail

Summary

• ID
  rs30831348
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130301710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTTAGG TTTTGGGTCC
  TGGGAGAGAT GTTGCCCCTG AAGAGACTAG GGTTATCATG CCCTGTGTTC CCTTTGTGCA
  ACATTGCTTA GCTTCCTGCT GACTTCCTCC CTTTGTGTGA TAGCTTTCTG CTGACTCTGT
  CGCATTTCTC CCCACAGCCT GTAGGGAAGA TGCTGTGCTT CTTAATAAAC TTGCTCTGTG
  K
  ATGACATAGC CTGTGCAAAA CCTCCAGATC CCAAACCTTC CCATTTTTAT TTTCTGATCC
  CAGTCATCCC TCCCAGGATC TCTGATCTTC CCTCTCAAGA TCCTGTCAAA GAACAACCTG
  CTAGTCTATG TTGTCCTGTA GCATGTATAT TGTTTAGTGT CTATCATCAT CTGGTGCCTT
  CCATTGTGAC AAGACAAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49674814	NES12991708	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30831348					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49674814	NES12991708	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130301710 () rs orientation: forward

Symbol	Name	Function Class
Rr417908	regulatory region 417908	1526 bp distal
Rr417909	regulatory region 417909	1624 bp distal
Rr417910	regulatory region 417910	within coordinates