rs30829298 SNP Detail

Summary

• ID
  rs30829298
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147605707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAGCAACATT AATAACACAG CAACATTTAC ACATAGGTAA ATAAAATGTA AACATATACA
  TTTCTTAGTT TTTAATCAGT GAAGAGGATG GACATTTTGA ATTAGAATTG TTGCTGTACC
  ACAGTGACTT CAGTTACATC CTCAGCTGCA AAGGATGTGG ATGGTGAAAA GCATCTCCCA
  CCTGTGTCTG AAAGTGTCCT GTGACTATGG AAGCTACAAT GATGATACTT TCCTCCTCCT
  CCTCCTCCTC CTCCTCCTCC TCCTCCTCCT GCTGCTGCTG CTGCTGCTGC TGCTGCTGCT
  K
  CTGCTGCTGC TGCTGCTCTT CCTCCTCCAC CTCCTTCTGC TGCTGCTGCC TCCTCCTCCT
  CCATTTTTTT TTCGTTTGTT TTTTTTTTTT TGTTTTTTTT TTTTGTTTTT GTTTTTGTTT
  TCTTTTTGAG ACAGGGTTTC TCTGTGTAGC CTTGGCAATC CTGGAACTCA CTCTGTAGAC
  CAGGTTGGCC TTGAACTCAG AAATTCCCCT GCCTCTGCCT CCCAAGTGTT GGGATTACAG
  GCGTGGGCCA CCACTCCCAG TGATGATACT TTCTTGTGTA TTAGTGTGTG AAGTGTCCAG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46449347	mCV25375883	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss147967097	ENSMUSSNP3624011	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30829298					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147605707 () rs orientation: forward

Symbol	Name	Function Class
Gm15951	predicted gene 15951	383 bp upstream
Gm69897	predicted gene, 69897	within coordinates
Rr398830	regulatory region 398830	1316 bp downstream
Rr398831	regulatory region 398831	666 bp upstream
Rr604494	regulatory region 604494	1413 bp distal
Rr604495	regulatory region 604495	422 bp distal
Vmn2r-ps20	vomeronasal 2, receptor, pseudogene 20	271 bp upstream