rs30828673 SNP Detail

Summary

• ID
  rs30828673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130662155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAAAGACT TCTTCTGCTC AGACTCTTTG
  TATCAGAAAC TAGGTGTGGA AATCCTCACT CACCCCGTGA CTGGGTGGTG TCAATGGCAT
  CCTCTGCAAC TGCATGTGGT GCTGTGTTTT TATTTACGGG TGTGCCGTCA GAATAACCGA
  Y
  CAATCTGGAA ATACAAAACT GAACCAGGTA ACGCACAGAC TTTAAGGCAT GATATAGAAG
  ACAAGGGGAT CTGGGCTCTC AGTAGCAGAG TGGCCAGTGA TCCTGACTTA AGTATGCTGG
  TGTCTAGTCA ATGTCTTGGG ATGTCCTTTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49673595	NES12996649	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C
ss319973027	CHEV_1_132630995	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30828673					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49673595	NES12996649	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130662155 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
AA986860	expressed sequence AA986860			Intron
				Noncoding-Transcript-Variant
Rr417950	regulatory region 417950			1798 bp distal
Rr417951	regulatory region 417951			600 bp distal
Rr417952	regulatory region 417952			99 bp distal
Tssr13523	transcription start site region 13523			1796 bp upstream
Tssr13524	transcription start site region 13524			565 bp upstream