rs30827358 SNP Detail

Summary

• ID
  rs30827358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136857755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAC AAAAATCAAG ATGTTCTTGA
  Y
  GGCCACAAGC TGCTGTGGGA CCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss46988959	NES10875294	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C		C		T
ss135938735	ENSMUSSNP1618445	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			C
ss320975044	CHEV_3_136814958	CHEVERUD	SCREENING_POP	f	SNP									C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs30827358					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46988959	NES10875294	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136857755 () rs orientation: forward

Symbol	Name	Function Class
Rr375787	regulatory region 375787	729 bp upstream
Rr585922	regulatory region 585922	1003 bp distal
Rr585923	regulatory region 585923	1317 bp proximal