rs30827354 SNP Detail

Summary

• ID
  rs30827354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136857657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC ACTCTTGCAC ATCCTCAGAG
  R
  CAGCTCTAGC TTCTCATCTC CAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss46988955	NES10875292	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A		G		G
ss135938732	ENSMUSSNP3322937	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320975043	CHEV_3_136814860	CHEVERUD	SCREENING_POP	f	SNP						A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs30827354					SNP	A	A	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46988955	NES10875292	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136857657 () rs orientation: forward

Symbol	Name	Function Class
Rr375787	regulatory region 375787	827 bp upstream
Rr585922	regulatory region 585922	905 bp distal
Rr585923	regulatory region 585923	1415 bp proximal