rs30826520 SNP Detail

Summary

• ID
  rs30826520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136857575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATGACTA ACAATTCTGG
  GAGCAATGTG GGTCTAATCA GATACCTCAT CTTAAAGGAG CTGGGTCAGA ATTCCAGAAG
  GGCAGAGACA ACTGGGAATG TCTCCAGGAC TTGAGCAGGC TTCATGGCAT GTTAATGGGA
  GAAAAAGATG AACCATTTAA AGTAAGTGTT AATACAATTA AATTACTGGA GGTAGAGGAG
  Y
  CTGCAGGGAA AAACCAAACT GGAGAGGAAA TAGGGAGGAA AAATCACCAC AAATTCCTCT
  CACTCTTGCA CATCCTCAGA GGCAGCTCTA GCTTCTCATC TCCAAAGTGT GATTACATTG
  TTCTAGTCTT TTTCCCCCCA AATGCACCCA TGTAAACACA AAAATCAAGA TGTTCTTGAT
  GGCCACAAGC TGCTGTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46988951	NES10875290	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30826520					SNP	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46988951	NES10875290	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136857575 () rs orientation: forward

Symbol	Name	Function Class
Rr375787	regulatory region 375787	909 bp upstream
Rr585922	regulatory region 585922	823 bp distal
Rr585923	regulatory region 585923	1497 bp proximal