rs30825545 SNP Detail

Summary

• ID
  rs30825545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136856329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGACTG TGTACATACA
  CATTTCATCT GAGCTCACAT CTTTCCGCCT CTCTTCAGAC AGGAAACCAC TTAGGATCCT
  TTTTAAAGGA CCTCTGAGTG TCGATGGGTC AAGAGAGCCA GTGATGTAAA AAAAAAGAGA
  CAAGGGCTGA GGGACGGCTG TGCTCCAAAG GCCTGGGAAG AAAGCTTATC GTGTTGCCCG
  Y
  TCTGGCTATG ACACATCCCA ACTCCTGGGA GGAAATCAAG AGCGGAAACT GGGCAACCAT
  GGAGATGAGT CACGAGCAAG GAGACTGTGA GCGTTATGAA GCCGACAGCT GCAGAACAAT
  GGAAGCTGCG AGGCTATTTT TGTTTGGCTT CAACAATTAA TTGAACCTGG TGGAGCTGAC
  AGTGTGCCTT CTCTCGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
ss46988935	NES10875361	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	PWD/PhJ	WSB/EiJ
rs30825545					SNP	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46988935	NES10875361	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136856329 () rs orientation: forward

Symbol	Name	Function Class
Rr585922	regulatory region 585922	within coordinates