rs30825311 SNP Detail

Summary

• ID
  rs30825311
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61176774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTGTCCCTT TGTGTTATAT AACAAAAGTT ACTCATCCTG GCCTTTTCTT AGTCAGACAG
  ACACTCTGCT CAGCACTGCC TCCTTAAAAA CACTTGACTC ACTCCACCCT CTGGAGAGAT
  ACTTGGCAAA TGTCATTCCT ACCTTCCCTG TTTAGCATCT GTCTCAACTT GCTGTCAAAG
  TGTATCCTGA AAAGCCCCCT GGCTGCACTC CTGCCTTCCA GCTTGCTACT TCGGAGTTTC
  ACATTTTTAT CTCCTCTAGG TGCTCATAAC ATGATGATGA AAATCTAGAG AACCAAGTTC
  K
  GTGCTGGCTC TCATGAGTCA TCATTTCTCT CACTATGGAA GTACAGTGTT GGGGTGGGGG
  TTGGGGTCAG TGTGGGGAGA GGGAGTAGGC GTGGGGGAAG GGAGTCAGCA TGGAGGGAGG
  GTGGGGGTGA GGGGGGAGGT TCACTAGAAA TTATTTTGGT TCTGAACCAG ATTCTGAATA
  AAAAGTTATG AAACCTTTTT ATTCATTAAA AAAAAAAATC CACACTAAAC TTTAGGGAAC
  TCCTCTGTCT ACATAATTAG TCAAGAAACA TGCTCTGGGT GTGGCTCTGT GGTAGAGTGC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45499738	mCV24861547	ABI	CRAMUS_MOUSE	f	SNP		G	T
ss46988154	NES10794662	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	G	G	G	G	G	G		T	G	G	T		G
ss135223362	ENSMUSSNP1326215	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
ss320787835	CHEV_3_61073275	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30825311					SNP	G	G	T	G	G	G	G	G	G	G	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46988154	NES10794662	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61176774 () rs orientation: forward

Symbol	Name	Function Class
Rr577480	regulatory region 577480	263 bp distal
Rr577481	regulatory region 577481	498 bp distal