rs30824450 SNP Detail

Summary

• ID
  rs30824450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61176156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATGCAA ATAGATACGC
  TGTATCTATA AAGCGCAGAT AGTCTCTGCA AGCTCATGCT CCTTCTGCCA TCTGTGTGTG
  TTGTTTGTCA TAGGTTCATC TCAAGCTTGC ACAGTCTGCA GTGGCAATCA AGGAAAGGTT
  AGAGTTCAAA GCCCCCTAGC GTCTCCAAAA TACCTGGTTT GTACCAGTGC GCATTAATGG
  Y
  TTTTCCCTCA AAATCAGCTT TGCACCACAC AATTTTTCCC TACATAGGAA CTAGAATTTG
  TTTTCATTTT TCAGTTATTT CCAGTTGCTC TCCTCCCTTG CACCACTAGG TGGCACCCAA
  AGAATCTATG AAAACTATCC CATGGTAGAT TTCATTTGTT ATTAGGAAAA AGAAAAAAAA
  CCAAGACAAA ACAAAAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46988142	NES10794656	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30824450					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46988142	NES10794656	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61176156 () rs orientation: forward

Symbol	Name	Function Class
Rr577480	regulatory region 577480	3 bp proximal
Rr577481	regulatory region 577481	99 bp proximal