rs30823644 SNP Detail

Summary

• ID
  rs30823644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61175236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGTCAC AACAATGAGA
  AAAACAATAT TAATTATTAA TTAGCATATG AAAATAAAAA GATAAAGAAA ATGGTTACCT
  TTTGAAATTC CCATTAAGAA ATGATGCCAA AGAAAATAAT AGTGTTGTGT GGCCTATTCT
  GAAGTTAATT GACAACAACA GGAAAATATT TTCAAAGAAT TTTAAAAGGA GAGGCTTTAT
  Y
  ATGCATATGA TAATAAATTG AAGACAGGTC AGTTTCTGGT TGGCTGGCTG GATCAGTGTT
  ATAAGTAATG ACACCTTGTC ATTCACTGTG TCTATACATT TACTGCATAG TCACAGACTT
  TACTGTAAGT GTTCCTAGTC AACAGTTACA TATTCCTAAG TTGACTTTAA TGAGCAGAGA
  AAGGAACATT TCGTCCAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46988124	NES10794647	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30823644					SNP	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46988124	NES10794647	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61175236 () rs orientation: forward

Symbol	Name	Function Class
Rr577480	regulatory region 577480	923 bp proximal
Rr577481	regulatory region 577481	1019 bp proximal