rs30821870 SNP Detail

Summary

• ID
  rs30821870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60957829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTAATT CCTACGCAGT
  CCAGAGAGAA AGACCCATCA ACTGAAGATA ATATATCGGC TACTAACTGG GTAACAGTTA
  ATAATTATGC TGTAGAACAG AAGGAGACAA CTACAGTGGA GGCACTATAA GCAGAAGCCA
  GTGCACAAAG AATGAGAGAT GCTGTTATTT GTGTCTGAGT TAAGTTTACT GAGTGGAATG
  Y
  GCTGTGAATT CAGTGGCAGT GGGGAAGCAT TGGGAGCTAA AGCAAGGCAA ACCCAGAAGA
  ATAATTTTGG CAGATCTCTG TTGCCATGCT AAAAAGCTTG GCTTTTGCTC CTAATTGTCC
  AGTGAAGAAG TGGAATCTGG TTGCTGGGGA GCTCCCAAAT TGGATTTGCA TGTGAAAAAG
  GAGCATATTT GGCAACAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46987322	NES10786244	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30821870					SNP	C	C	T	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46987322	NES10786244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60957829 () rs orientation: forward

Symbol	Name	Function Class
Rr577470	regulatory region 577470	37 bp proximal